PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008239071.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 175aa    MW: 19734.3 Da    PI: 6.3493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008239071.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.1e-13971741798
                     E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +p +f +++ +++k +  t +l   + +sW v l +  + +++ ++ GW  F+++n L++gD+++F+l+++++ +l+v++fr
  XP_008239071.1  97 HVPVSFSKDFiKLEK-Q--TAKLLV-RKKSWCVSL-IAHSVNTFPFSVGWAAFARENCLRAGDVCIFELVDKNDISLKVHMFR 174
                     567777776644443.3..455444.66*******.466777799*************************9999999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.99781175IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-1582174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1683174IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-686174IPR003340B3 DNA binding domain
CDDcd100178.71E-1390174No hitNo description
PfamPF023626.1E-1197174IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MEETNEDDEN NSVEILEDYD DENDNSAEIF GDYQPCPKIR QKSGPLSCPL TREKTRLSTH  60
SSPEISSSSS KRVVEAANKF ISNHSFRVTV GSSLMPHVPV SFSKDFIKLE KQTAKLLVRK  120
KSWCVSLIAH SVNTFPFSVG WAAFARENCL RAGDVCIFEL VDKNDISLKV HMFRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239071.11e-128PREDICTED: B3 domain-containing protein REM19-like
TrEMBLM5W7Q42e-85M5W7Q4_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-11related to vernalization1 1